File List

Here is a list of all files with brief descriptions:

[detail level 1234]

▼ core
► agent
agent.cc
agent.h
agent_handle.h
agent_pointer.cc
agent_pointer.h
agent_uid.h
agent_uid_generator.cc
agent_uid_generator.h
cell.cc
cell.h
cell_division_event.cc
cell_division_event.h
new_agent_event.h
spherical_agent.h
► analysis
line_graph.cc
line_graph.h
reduce.h
style.cc
style.h
time_series.cc
time_series.h
► behavior
behavior.h
chemotaxis.h
gene_regulation.h
growth_division.h
secretion.h
stateless_behavior.h
► container
agent_flat_idx_map.h
agent_uid_map.h
agent_vector.h
fixed_size_vector.h
flatmap.h
inline_vector.h
math_array.h
parallel_resize_vector.h
shared_data.h
► diffusion
continuum_interface.cc
continuum_interface.h
diffusion_grid.cc
diffusion_grid.h
euler_depletion_grid.cc
euler_depletion_grid.h
euler_grid.cc
euler_grid.h
► environment
environment.h
kd_tree_environment.cc
kd_tree_environment.h
morton_order.cc
morton_order.h
octree_environment.cc
octree_environment.h
uniform_grid_environment.cc
uniform_grid_environment.h
► execution_context
copy_execution_context.cc
copy_execution_context.h
execution_context.h
in_place_exec_ctxt.cc
in_place_exec_ctxt.h
► gpu
cuda_error_chk.h
cuda_pinned_memory.h
cuda_timer.h
gpu_helper.cc
gpu_helper.h
helper_math_double.h
mechanical_forces_op_cuda_kernel.h
opencl_state.cc
opencl_state.h
► memory
memory_manager.cc
memory_manager.h
► multi_simulation
► algorithm
algorithm.h
algorithm_registry.cc
algorithm_registry.h
parameter_sweep.cc
particle_swarm.cc
► optimization_param_type
log_range_param.h
optimization_param_type.h
particle_swarm_param.h
range_param.h
set_param.h
database.h
dynamic_loop.h
experiment.h
mpi_helper.h
multi_simulation.cc
multi_simulation.h
multi_simulation_manager.cc
multi_simulation_manager.h
optimization_param.h
► operation
bound_space_op.h
continuum_op.h
default_ops.cc
dividing_cell_op.h
load_balancing_op.h
mechanical_forces_op.h
mechanical_forces_op_cuda.cc
mechanical_forces_op_cuda.h
mechanical_forces_op_opencl.cc
mechanical_forces_op_opencl.h
op_timer.h
operation.cc
operation.h
operation_registry.cc
operation_registry.h
reduction_op.cc
reduction_op.h
visualization_op.h
vtune_op_wrapper.h
► param
command_line_options.cc
command_line_options.h
param.cc
param.h
param_group.cc
param_group.h
► util
cpptoml.h
csv_reader.h
debug.h
filesystem.cc
filesystem.h
git_tracker.cc
git_tracker.h
io.cc
io.h
iterator.h
jit.cc
jit.h
log.h
macros.h
math.h
numa.h
partition.h
plot_memory_layout.cc
plot_memory_layout.h
proc.cc
proc.h
progress_bar.cc
progress_bar.h
random.cc
random.h
root.cc
root.h
spinlock.h
string.cc
string.h
thread_info.cc
thread_info.h
timing.h
timing_aggregator.h
tuple.h
type.h
vtune.h
vtune_helper.h
► visualization
► paraview
adaptor.cc
adaptor.h
helper.cc
helper.h
jit_helper.h
mapped_data_array.h
parallel_vti_writer.cc
parallel_vti_writer.h
parallel_vtu_writer.cc
parallel_vtu_writer.h
vtk_agents.cc
vtk_agents.h
vtk_diffusion_grid.cc
vtk_diffusion_grid.h
► root
adaptor.h
notebook_util.h
visualization_adaptor.cc
visualization_adaptor.h
algorithm.h
exporter.cc
exporter.h
functor.h
interaction_force.cc
interaction_force.h
load_balance_info.h
model_initializer.cc
model_initializer.h
randomized_rm.h
real_t.h
resource_manager.cc
resource_manager.h
scheduler.cc
scheduler.h
shape.h
simulation.cc
simulation.h
simulation_backup.cc
simulation_backup.h
substance_initializers.h
type_index.cc
type_index.h
▼ neuroscience
► new_agent_event
neurite_bifurcation_event.h
neurite_branching_event.h
new_agent_event.cc
new_neurite_extension_event.h
side_neurite_extension_event.h
split_neurite_element_event.h
module.cc
module.h
neurite_element.cc
neurite_element.h
neuron_or_neurite.cc
neuron_or_neurite.h
neuron_soma.cc
neuron_soma.h
neuroscience.h
param.cc
param.h
biodynamo.h