param.h

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// -----------------------------------------------------------------------------
//
// Copyright (C) 2021 CERN & University of Surrey for the benefit of the
// BioDynaMo collaboration. All Rights Reserved.
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
//
// See the LICENSE file distributed with this work for details.
// See the NOTICE file distributed with this work for additional information
// regarding copyright ownership.
//
// -----------------------------------------------------------------------------
 
#ifndef NEUROSCIENCE_PARAM_H_
#define NEUROSCIENCE_PARAM_H_
 
#include <cinttypes>
#include <memory>
#include <set>
#include <string>
#include <unordered_map>
#include <vector>
#include "core/param/param_group.h"
#include "core/real_t.h"
#include "core/util/root.h"
#include "cpptoml/cpptoml.h"
 
namespace bdm {
namespace neuroscience {
 
struct Param : public ParamGroup {
  BDM_PARAM_GROUP_HEADER(Param, 1);
 
  real_t neurite_default_actual_length = 1.0;
 
  real_t neurite_default_density = 1.0;
 
  real_t neurite_default_diameter = 1.0;
 
  real_t neurite_default_spring_constant = 10;
 
  real_t neurite_default_adherence = 0.1;
 
  real_t neurite_default_tension = 0.0;
 
  real_t neurite_min_length = 2.0;
 
  real_t neurite_max_length = 15;
 
  real_t neurite_minimial_bifurcation_length = 0;
 
 protected:
  void AssignFromConfig(const std::shared_ptr<cpptoml::table>&) override;
};
 
}  // namespace neuroscience
}  // namespace bdm
 
#endif  // NEUROSCIENCE_PARAM_H_