| AddBehavior(Behavior *behavior) | bdm::Agent | |
| adherence_ | bdm::Cell | private |
| Agent() | bdm::Agent | |
| Agent(TRootIOCtor *io_ctor) | bdm::Agent | explicit |
| Agent(const Agent &other) | bdm::Agent | |
| ApplyDisplacement(const Real3 &displacement) override | bdm::Cell | virtual |
| AssignNewUid() | bdm::Agent | |
| BDM_AGENT_HEADER(NeuronSoma, Cell, 1) | bdm::neuroscience::NeuronSoma | private |
| behaviors_ | bdm::Agent | protected |
| box_idx_ | bdm::Agent | protected |
| CalculateDisplacement(const InteractionForce *force, real_t squared_radius, real_t dt) override | bdm::Cell | inlinevirtual |
| Cast(TFrom *agent) const | bdm::Agent | inlineprotected |
| Cast(TFrom *agent) const | bdm::Agent | inlineprotected |
| Cell() | bdm::Cell | inline |
| Cell(real_t diameter) | bdm::Cell | inlineexplicit |
| Cell(const Real3 &position) | bdm::Cell | inlineexplicit |
| ChangeVolume(real_t speed) | bdm::Cell | inline |
| CreateNewAgents(const NewAgentEvent &event, const std::initializer_list< Agent * > &prototypes) | bdm::Agent | inline |
| CriticalRegion(std::vector< AgentPointer<>> *aptrs) override | bdm::neuroscience::NeuronSoma | virtual |
| daughters_ | bdm::neuroscience::NeuronSoma | protected |
| daughters_coord_ | bdm::neuroscience::NeuronSoma | protected |
| density_ | bdm::Cell | private |
| diameter_ | bdm::Cell | private |
| Divide() | bdm::Cell | inlinevirtual |
| Divide(real_t volume_ratio) | bdm::Cell | inlinevirtual |
| Divide(const Real3 &axis) | bdm::Cell | inlinevirtual |
| Divide(real_t volume_ratio, const Real3 &axis) | bdm::Cell | inlinevirtual |
| Divide(real_t volume_ratio, real_t phi, real_t theta) | bdm::Cell | inlinevirtual |
| ExtendNewNeurite(const Real3 &direction, NeuriteElement *prototype=nullptr) | bdm::neuroscience::NeuronSoma | |
| ExtendNewNeurite(real_t diameter, real_t phi, real_t theta, NeuriteElement *prototype=nullptr) | bdm::neuroscience::NeuronSoma | |
| GetAdherence() const | bdm::Cell | inline |
| GetAgentPtr() const | bdm::Agent | inline |
| GetAllBehaviors() const | bdm::Agent | |
| GetBoxIdx() const | bdm::Agent | |
| GetDaughters() const | bdm::neuroscience::NeuronSoma | |
| GetDensity() const | bdm::Cell | inline |
| GetDiameter() const override | bdm::Cell | inlinevirtual |
| GetIdentifierSWC() const | bdm::neuroscience::NeuronOrNeurite | virtual |
| GetLock() override | bdm::neuroscience::NeuronSoma | inlinevirtual |
| GetMass() const | bdm::Cell | inline |
| GetNeuronOrNeuriteAgentPtr() const | bdm::neuroscience::NeuronOrNeurite | |
| GetPosition() const override | bdm::Cell | inlinevirtual |
| GetPropagateStaticness() const | bdm::Agent | inline |
| GetRequiredVisDataMembers() const | bdm::Agent | inlinevirtual |
| GetShape() const override | bdm::Cell | inlinevirtual |
| GetTractorForce() const | bdm::Cell | inline |
| GetTypeName() const | bdm::Agent | inlinevirtual |
| GetUid() const override | bdm::neuroscience::NeuronSoma | inlinevirtual |
| GetVolume() const | bdm::Cell | inline |
| Initialize(const NewAgentEvent &event) override | bdm::neuroscience::NeuronSoma | virtual |
| InitializeBehaviors(const NewAgentEvent &event) | bdm::Agent | private |
| is_static_ | bdm::Agent | private |
| is_static_next_ts_ | bdm::Agent | mutableprivate |
| IsNeuriteElement() const | bdm::neuroscience::NeuronOrNeurite | |
| IsNeuronSoma() const | bdm::neuroscience::NeuronOrNeurite | |
| IsStatic() const | bdm::Agent | inline |
| kXAxis | bdm::Cell | static |
| kYAxis | bdm::Cell | static |
| kZAxis | bdm::Cell | static |
| lock_ | bdm::Agent | private |
| MovePointMass(const Real3 &normalized_dir, real_t speed) | bdm::Cell | inline |
| NeuronSoma() | bdm::neuroscience::NeuronSoma | |
| NeuronSoma(const Real3 &position) | bdm::neuroscience::NeuronSoma | explicit |
| NeuronSoma(const NeuronSoma &other) | bdm::neuroscience::NeuronSoma | inline |
| New() const =0 | bdm::Agent | pure virtual |
| NewCopy() const =0 | bdm::Agent | pure virtual |
| operator delete(void *p) | bdm::Agent | inline |
| operator new(size_t size) | bdm::Agent | inline |
| OriginOf(const AgentUid &daughter_uid) const override | bdm::neuroscience::NeuronSoma | virtual |
| position_ | bdm::Cell | private |
| PrintSWC(std::ostream &out) const | bdm::neuroscience::NeuronSoma | |
| propagate_staticness_neighborhood_ | bdm::Agent | private |
| PropagateStaticness(bool beginning=false) | bdm::Agent | |
| RemoveBehavior(const Behavior *behavior) | bdm::Agent | |
| RemoveDaughter(const AgentPointer< NeuriteElement > &daughter) override | bdm::neuroscience::NeuronSoma | virtual |
| RemoveFromSimulation() | bdm::Agent | virtual |
| run_behavior_loop_idx_ | bdm::Agent | private |
| RunBehaviors() | bdm::Agent | |
| RunDiscretization() | bdm::Agent | virtual |
| SetAdherence(real_t adherence) | bdm::Cell | inline |
| SetBoxIdx(uint32_t idx) | bdm::Agent | |
| SetDensity(real_t density) | bdm::Cell | inline |
| SetDiameter(real_t diameter) override | bdm::Cell | inlinevirtual |
| SetMass(real_t mass) | bdm::Cell | inline |
| SetPosition(const Real3 &position) override | bdm::Cell | inlinevirtual |
| SetPropagateStaticness(bool value=true) | bdm::Agent | inline |
| SetStaticnessNextTimestep(bool value) const | bdm::Agent | inline |
| SetTractorForce(const Real3 &tractor_force) | bdm::Cell | inline |
| SetVolume(real_t volume) | bdm::Cell | inline |
| tractor_force_ | bdm::Cell | private |
| TransformCoordinatesGlobalToPolar(const Real3 &coord) const | bdm::Cell | protected |
| uid_ | bdm::Agent | protected |
| Update(const NewAgentEvent &event) override | bdm::neuroscience::NeuronSoma | virtual |
| UpdateBehaviors(const NewAgentEvent &event) | bdm::Agent | private |
| UpdateDependentPhysicalVariables() override | bdm::neuroscience::NeuronSoma | virtual |
| UpdateDiameter() | bdm::Cell | inline |
| UpdatePosition(const Real3 &delta) | bdm::Cell | inline |
| UpdateRelative(const NeuronOrNeurite &old_rel, const NeuronOrNeurite &new_rel) override | bdm::neuroscience::NeuronSoma | virtual |
| UpdateStaticness() | bdm::Agent | |
| UpdateVolume() | bdm::Cell | inline |
| volume_ | bdm::Cell | private |
| ~Agent() | bdm::Agent | virtual |
| ~Cell() override=default | bdm::Cell | |
| ~NeuronOrNeurite() | bdm::neuroscience::NeuronOrNeurite | virtual |
| ~NeuronSoma() override | bdm::neuroscience::NeuronSoma | |
